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Benchmarking on reference-free metagenome datasets would have resulted in a set of duplicate clusters and an expected duplication rate but would give no indication of the accuracy of each method for duplicate detection.
If Canadians were zealous in pursuing a set of duplicate gold medals for their pairs skaters, Jamie Salé and David Pelletier, they are positively on a crusade in their quest for the gold in hockey.
She validated the stories of David Floyd, who'd been stopped by police while trying to let a tenant into his apartment with a set of duplicate keys.
When a set of duplicate pairs is found, only the one with the highest average base quality is kept; the rest are discarded as duplicates.
To quantify sequence diversification among a set of duplicate genes, we took advantage of a standard parameter in network analysis – the clustering coefficient.
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Many protein-coding genes have duplicates, and deletion of one gene in a set of duplicates is typically less critical than deletion of a singleton gene, as Gu et al. demonstrated in yeast [31].
However, the CYP2AEs cluster phylogenetically with the CYP2J orthologs CYP2N/P/V/AE, suggesting a possible insertion of a set of duplicated CYP2J orthologs.
A set of duplicated samples or standards were loaded into 96-well plate, and their absorbance were read at 532 nm by a spectrophotometer.
In this study, we used experimental green fluorescent protein (GFP) data to assemble a set of duplicated genes with subcellular localization data available for both copies.
An advantage of the two-pass duplicate marking strategy is that one can retain the 'best' read-pair of a set of duplicates, while SAMBLASTER always keeps the first such pair found in its input.
Here we report the potential orthologous chromosomes of catfish LG8 in several sequenced fish species, conserved syntenies, annotation of genes on LG8 of the catfish, and identification of a set of duplicated genes.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com