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However, it would be desirable to support users with a batch execution, i.e., the preparation of a parameter file describing the reconstruction protocol combined with an automatic application of this protocol to a sequence of datasets without further user support.
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It works by representing a pipeline as a sequence of dataset transformations.
The overall classifier is fitted to the dataset using a sequence of weak learners, which in this implementation are decision trees.
Thus, the dataset is a sequence of intervals with predictors evaluated using the MDS collected on the first day of the interval.
Phylogenetic analysis of a sequence dataset consisting of all nitrilase genes from cultivated bacteria shows that 18 sequences belong to subfamilies one and two (Fig. 1).
To identify duplicated ABC transporter pairs, we run a phylogenetic analysis using ABC nucleotide sequences of Dataset B, using Maximum Likelihood method and General Time Reversible model.
Even when using a single method, the tree topology of a sequence dataset can change depending on which region is selected [ 10].
Accession no., sequence IDs, sources and collection time of the WSSVs sequences of dataset.
In conclusion, Sma3s is a versatile tool for high-throughput annotation of a wide variety of sequence datasets that outperforms the accuracy of other well-established annotation algorithms, and it can enrich existing database annotations and uncover previously hidden features.
To determine the HIV-1 subtype, one clone from each patient was randomly chosen to a sample set of 82 V1-V3 sequences and aligned with a reference sequence dataset of all major subtypes, subsubtypes and CRFs (downloaded from Los Alamos Sequence Database) in MEGA4, as described.
Second generation sequencing technologies have offered monumental improvements in the production and accuracy of sequencing (in terms of read length, cost, and ease of operation), resulting in an avalanche of sequencing datasets.
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