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The first image of a sequence is defined as a reference image under zero load, wherein interest points are determined and connected in a triangular irregular network structure.
Suppose that the ((n+k))th term of a sequence is defined consecutively by a linear combination of the preceding k terms: a_{n+k}=c_{0}a_{n}+c_{1}a_{n+1}+ cdots+c_{k-1}a_{n+k-1}, where (c_{0},c_{1},ldots,c_{k-1}) are real constants.
A word profile of a sequence is defined as its 8-mer composition.
The CAI of a sequence is defined as the geometrical mean of the values across the sequence.
The score of a sequence is defined as the maximal weighted match scores subject to the constraint that the matches cannot overlap.
b A sequence is defined as "pseudogene" if it possesses at least 1 premature stop codon and/or frameshift and/or has less than seven TM domains.
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Let a sequence be defined by (1.8).
A sequence was defined as three or more consecutive complete observation sets with the same aggregate scores.
A sequence was defined as a fragment if in the BlastP alignment between the query and hit sequences there was no overlap in the regions of sequence where active site residues were predicted to be.
The degree of concentration of predicted TFBS in a sequence was defined as the accumulated score C, which is a summation of the MATCH score for PWMs in the subsequence and is calculated for each PMW and corresponding sequence.
Therefore, in the following, A DNA sequence is defined as a pure GA-sequence, if it consists exclusively of G's and A's and is longer than 50 bases.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com