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The anthers of F1 hybrids between Lebed and T65 contained both starch-engorged and empty pollen grains, showing a seed setting rate of 36.2%, as against a 51.3% seed setting rate in Lebed (Additional file 2: Figure S1).
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To find a bilateration order in general, we select a seed set as the first level in the ordering.
BTS is rather simple since it directly outputs a seed set for one of the constituent topics.
Whang et al. [2] proposed another overlapping community detection algorithm called NISE, based on seed set expansion, which starts with a seed set generated by Graclus or other methods and uses random walk to obtain overlapping communities.
The first algorithm, Best Topic Selection (BTS), minimizes online processing by simply using a seed set for one of the constituent topics.
As we understand, a crucial part of IM is how to compute the EIS given a node, since only we know the EIS of each node, and then we could find a seed set to maximize the combinatorial EIS.
IM: Given a weighted directed graph G V,E,w) and a parameter k, the IM problem is to find a seed set S of cardinality k to maximize σ(S).
Third, BTS[Greedy] and BTS[PMIA] are not expected to be better than MIS[Greedy] and MIS[PMIA], since BTS is a baseline algorithm only selecting a seed set from one topic.
However, any set of papers can be made a seed set for the associative search.
Although another biclustering algorithm can be employed in BEEM, we chose ISA because it starts a search from a seed set as well as EEM does, and we can easily combine ISA and the EEM approach.
A seed set S consists of genes known to be associated with the query disease q.
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