Exact(5)
A script implemented by us was used to align the sequences and to extract the insertions/deletions in Venter's chromosomes, considering three size classes (10 100, 100 1000, >1000 bp), as well as the single nucleotide polymorphisms (SNPs).
GC content analysis of Sirtuin genes were performed in the various organisms using a script implemented by us (Table 1).
The GC levels of compositionally nearly homogeneous DNA segments were calculated using a script implemented by us.
For the remaining genes a script implemented by us was used in order to identify the coding sequences beginning with a start codon and ending with a stop codon.
For the remaining genes a script implemented by us was used in order to identify the coding sequences beginning with a start codon and ending with a stop codon in order to calculate reliable GC, GC1, GC2 and GC3 values (the GC levels of first, second and third codon position).
Similar(55)
The reads were first trimmed using the adaptive trimming function of a trimming perl script implemented by Nik Joshi at The Bioinformatics Core, UC Davis Genome Centre http://wiki.bioinformatics.ucdavis.edu/index.php/Trim.pl.edu/index.php/Trim.pl
EGN is a script implemented in Perl.
Our Box Cox and curvature automated transformations are based on a Python script, implemented as an easy-to-use script tool in ArcGIS.
The feature selection was completed using a custom script implemented in SAS.
A perl script implementing this method is available at http://www.stat.osu.edu/~lkubatko/software/HybTree/.stat.osu.edu/~lkubatko/software/HybTree/
Map distances between adjacent bins arranged in the order of the consensus map were calculated using a purpose-built perl script implementing the multi-point algorithm described by Lalouel (Additional File 15) [ 40] (also implemented in JoinMap 3.0).
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