The phrase "a scoring scheme that" is correct and usable in written English.
You can use it when discussing a method or system for evaluating or assessing performance, typically in educational or competitive contexts.
Example: "The teacher implemented a scoring scheme that allowed for more comprehensive feedback on student assignments."
Alternatives: "an evaluation system that" or "a grading framework that".
Relative sensitivity values were generated using a scoring scheme that allocated values of 4, 3, 2, or 1 depending on the concentration of agent where strain sensitivity was identified; 4 is allocated to the lowest, and 1 is allocated to the highest concentration of damaging agent in the plate.
and combines them into a scoring scheme that allows for genes prioritization.
To account for the variable reliability of both types of associations, we provide a scoring scheme that allows for ranking of the inferences by confidence.
An independent criteria for the fitting quality is performed by a scoring scheme that was not used in generating the structures.
In this paper we show that by combining different robustness and stability measures, one can obtain a scoring scheme that outperforms any individual measure.
Our approach is to approximate positional homologs as bidirectional best hits using a scoring scheme that integrates both sequence and gene context similarity scores.
In the E. coli dataset, even a simple scoring scheme that assigns a score of 1 to matches and 0 to mismatches performs competitively (data not shown).
To align such proteins, Kováč et al. [ 16] combined profile HMMs (capturing the properties of the repeating motif) and PHMMs (modeling alignments) into a single scoring scheme that can be decoded by a newly proposed algorithm.
Thus, another general method for synteny detection uses dynamic programming to chain pair-wise collinear genes, often based on a certain scoring scheme that rewards adjacent collinear genes and penalizes the distance difference between them (Haas et al. 2004; Soderlund et al. 2006; Wang et al. 2006, 2012; Tang et al. 2008b; Rodelsperger and Dieterich 2010).
Given a substitution model, there is an alignment scoring scheme that corresponds to that substitution model, so that the score for any alignment is the log of the likelihood of the corresponding set of substitutions.
Since multiple network alignment requires more than two networks by definition, we would simply need to devise an appropriate scoring scheme that can handle more than a pair of alignable PPIs at once, and then extend the notion of the APE graph accordingly.
