Sentence examples for a rooted reference from inspiring English sources

However, these limitations not withstanding, the availability of a rooted reference tree greatly facilitates the integration between gene and reference tree [ 84, 85].

The EEEP algorithm has been developed to address some of the problems outlined above, by considering unrooted, possibly multifurcating test trees while imposing time constraints on edit operations that are implied by a rooted reference tree.

Since a strict molecular clock assumption is frequently violated by empirical data [ 13, 14], and the rooting of test trees may not be obvious in the face of LGT and biased evolution, comparisons between a rooted reference tree and one or more unrooted 'test' trees have the strongest evolutionary justification and are more general than comparisons between two rooted trees.

Authors' response: As is now better described in the manuscript using more precise nomenclature, the objective of testing for ribosomal congruence was to determine to what extent the ribosomal proteins could be used as a rooted reference backbone tree upon which to map gene reticulations.

A fully bifurcating rooted reference tree is necessary.

We require a method to compare a rooted binary reference tree and an unrooted multifurcating test tree to test when they are topologically congruent.

The problem that we are attempting to solve here is slightly different from the above in that we have a rooted binary reference tree and an unrooted, possibly multificating, test tree.

For an overview of Maimonides' opposition to the Sabian heresy, as well as a sense of this category in Maimonides as a phenomenologically-rooted, as opposed to an historically-rooted, reference to a certain kind of pseudo-scientific outlook, see Stroumsa 2009, 84-105 and 138-52; on Sabianism, see too Pines 1963, cxxiii-iv.

Throughout this work, unless otherwise stated, the term tree refers to a rooted binary tree.

Throughout this article, the term tree refers to a rooted fully binary tree.

Figure 4 illustrates a rooted graph with benzene as root.