Sentence examples for a revised alignment from inspiring English sources

After staggering these hard-to-align sections in a revised alignment (effectively removing them from consideration) and rerunning the PAML tests, we found no evidence of positive selection elsewhere in these genes (supplementary table S4, Supplementary Material online).

LCRs were identified by application of the Miropeats program [ 41] to the revised alignment.

The clones were identified by Blast of the revised alignment consensus to the chimpanzee BAC end sequence database [ 47].

The repeat sequences were extracted from the revised alignment of joined clones following the positions of the Miropeat's output and checked for their nucleotide identity using sim2 [ 42] and Blast 2.0 [ 43, 44].

For suspicious alignments (which had low percent identities or many gaps), we removed problematic sequences and reran PAML on these revised alignments.

We checked the CDS alignments and removed very short gene sequences that could bias the analysis, and re-ran PAML on these revised alignments.

I have included some of the reviewers' minor comments that you may wish to address in a revised version. 1) In Figure 2, an alignment of a 13-residue section from various Fam20A and Fam20C kinases is shown.

Sequence alignments (e.g., Figure 2) routinely showed that the truncated "leader" sequence of a revised gene was not a unique insert, but instead corresponded to the upstream intergenic region of the other orthologs.

A revised budget later passed.

In 1649 a revised treaty was signed.

La Scala produced a revised version in 1978.