Sentence examples for a representative conformation from inspiring English sources

A representative conformation of FBP21-WWs is shown in Fig. 2I.

(I) A representative conformation showing some contacts between the domains, in which hydrophobic residues are colored in gray and charged residues are colored in red.

This was done by clustering the trajectory using backbone dihedral angles for residues 20-22 and selecting the conformation closest to the centre of each cluster as a representative conformation.

(5) One conformation was randomly chosen from each cluster as a representative conformation.

A representative conformation of the protein-OLA complex, in which OLA128 was about to leaving the protein, is shown in Figure 2. In the course of the OLA128 dissociation, small changes in the protein backbone conformation appeared to happen; the rotation of the sidechains of a few residues further enlarged the opening size so as to allow the egress of OLA128.

The structure shown in Figure  7E is a representative conformation, drawn with visual molecular dynamics (VMD) molecular viewer [ 36]; mobile regions are shown in orange, blue and green.

Based on these compounds, a molecular docking was firstly performed with BMS-806 to the gp120 cavity in order to get a representative ligand conformation for the 3D-QSAR process.

A representative intermediate conformation was observed when the C-subunit was crystallized with adenosine; however, there is clearly an ensemble of intermediate conformations.

The snapshot obtained at the end of the 115 ns ABMD simulations (MSD value of <0.7 Å) was used as a representative activated conformation of δ-OR and was further simulated with or without positional restraints on the TM Cα atoms.

To investigate whether AHP adopts two different conformations found in Clusters 1 and 2 or one of the two, a second round of 20 10-ns-long simulations on AHPBoNTAe were carried out using the representative conformation of AHPBoNTAe in Cluster 2 as an initial conformation.

These results suggest that the average or representative conformation in Cluster 3 of the second-round simulations best represents the AHPBoNTAe complex structure in water.