Sentence examples for a repeat filtering from inspiring English sources

Then we set elements of a repeat filtering bit vector (RFV) corresponding to 14-mers within the 99.5 percentile.

Since it is possible for a repeated sequence to be part of an exon, we apply a very light repeat filtering based on frequency counts of sparse words.

High sensitivity of the algorithm is achieved by using a small word size and very light repeat filtering.

Repeat filtering removed markers with match scores of the top hits that were within 50 points of each other.

Our goal was to keep the level of repeat filtering moderate, because missing input local alignments can negatively impact accuracy of the compartmentization algorithm.

According to our tests (Table 14), the repeat filtering in Compart resulted in significantly fewer words filtered out, the least number of words filtered out exclusively, and by far the best running time.

In the rest of this sub-section we evaluate the repeat filtering step, the effect of using the PV in Compart matching, and compare the results of the compartmentization based on local alignments computed with different methods.

The repeated filtering operations couple the operation over a wider stencil without using direct formulas.

The authors present a new spliced alignment algorithm that involves indexing words in the genome and mRNAs, repeats filtering, comparison of the indexes and creating compartments, refinement using a dynamic programming procedure.

The first strategy was a simple repeat filter for removing the translocations overlapping with repetitive regions, and the second strategy was the low mappability regions filter to remove the translocations falling into the low mappability regions (genomic regions tending to produce ambiguous mapping).

To isolate and sequence orthologous non-coding regions, we started by identifying TEs in the A. thaliana genome with a BLASTn search, using a 1e-20 cut-off ano no repeat filtering, against the release 4 genome.