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We tested a range of locus (100 to 1000 bp) and genotype thresholds (1 to 120%) and selected the pair of values that simultaneously minimized the mismatch error rate, minimized the probability of misscoring a presence allele (ε1.0 error rate), and maximized the number of loci retained.
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However, in one extensive study examining recombination rates across a diversity of studies involving multi-locus sequence typing from a variety of organisms (and therefore across a range of loci), Pérez-Losada et al. [18] estimated a wide range of recombination rates similar to those modeled here.
In conclusion, a population genetic approach has allowed host assignment for C. jejuni for which host-specific markers are unavailable but host species populations are differentiated by allele frequency at a range of loci.
Although we used a range of loci identified from the literature and from databases, we specifically screened microsatellite markers that have been previously mapped to known chromosome arms in O. mykiss (Guyomard et al. 2006; Rexroad et al. 2008).
The analyses laid out in Devlin et al. (28) cannot be precise when predicting the number of loci with common variants of modest impact on risk (0.8< risk <1.2); the modelling is consistent with a range of loci from zero to many thousands.
A range of per locus mutation rates from 1.2975 × 10-5 to 5.19 × 10-5 was used for our 519-bp segment of the control region, reflecting the range of divergence rates described above.
DNA extracted from familial and sporadic colorectal neoplasms was compared with constitutional DNA using a range of hypervariable locus specific probes to assess the extent of allele loss during conversion to malignancy.
We then investigate the power of both one-stage method and mixed two-stage method to detect interacting disease loci for a range of two-locus epistatic models in a case control study design.
A range of resistance loci against different races of Xanthomonas oryzae pv.
A range of multi-locus estimators have been developed, and although they are strongly correlated, the choice of estimator can influence results.
Despite the suggestions from early naturalists that Huia were highly territorial and that the species had limited dispersal capability, no evidence for population genetic structure was detected using a range of nuclear loci.
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