Sentence examples for a quality alignment from inspiring English sources

As the entire data from the ten subjects contained too many sequences for a quality alignment, sequences were aligned by subject using the Aligner web tool of the RDP, and then clustered using the Complete Linkage Clustering tool (with a maximum distance cutoff of 97%).

Second, one needs a quality alignment between those paralogs.

Out of 35 million short reads derived from various cattle tick life cycle stages and three key organs, 3.5 million reads were aligned onto known miRNA loci on the Drosophila genome with at least a quality alignment score of Q = 1 (Table 1).

After trying a variety of settings, the final Gblocks settings were selected to yield a good quality alignment while not sacrificing an unnecessarily large amount of data.

First we selected from each group of reads (U, R, and M) those that have a high chance of finding a good quality alignment with the chromosomal regions of interest by requiring that they share at least a common 12-mer with the region, using the tagger tool from the fetchGWI software package.

The purpose of this study was to create and validate an aligner with the goal of quickly generating a high quality alignment and having the flexibility to use any reference alignment.

Using the simple nearest alignment space termination algorithm, the resulting aligner operates in linear time, requires a small memory footprint, and generates a high quality alignment.

The delta SEN (SEN of full alignment - SEN of subalignment) is an estimate for the distance from the "true" SEN value obtained when using a subset of sequences that may result in a lower quality alignment and structure.

However, as suggested by Wu et al. [ 55], these global column-specific approaches may mask well-aligned, phylogenetically informative sites within a particular clade, if other clades within the alignment have a poorer quality alignment for these sites.

This procedure assumes that after filtering, a higher mean ConQuass score is achieved because the remaining proteins have a higher quality alignment.

Done properly, this can produce a better quality alignment than automated methods alone.