The phrase "a published genome sequence" is correct and usable in written English.
It can be used when referring to a genome sequence that has been made publicly available through scientific publication or databases.
Example: "The research team analyzed a published genome sequence to identify potential genetic markers for the disease."
Alternatives: "an available genome sequence" or "a documented genome sequence".
RNA-seq has revolutionized the ability to perform developmental biology research in organisms without a published genome sequence.
The transcriptional unit is present in the all three strains (DSM 319, QM B1551 and WSH-002) with a published genome sequence.
Moreover, RNA-Seq analysis facilitates research using species without a published genome sequence, such as litchi, by providing massive sequence data sets for molecular marker development, gene discovery, transcriptional analysis, and pathway enrichment analysis.
Here we present our approach that utilizes 3'UTR sequencing to rapidly develop SNP and haplotype markers in sweet cherry, a species without a published genome sequence and a non-model crop.
The closest mesophile (Topt ≤ 40 °C) with a complete published genome sequence was identified for each thermophile using published phylogenies.
Considering that the number of BNGRs is likely to be similar to that of Drosophila neuropeptide GPCRs, the large number of putative BNGR contigs clearly suggests that most BNGRs are fragmented into several contigs, making it impossible to predict the whole structure of a BNGR from the published genome sequence.
This probably reflects the ascertainment bias because SNPs are selected from a comparison with the published genome sequence of the Brown Norway rat [ 7].
A significant percentage (≈ 15%) of sequences passing the first two filters did not have a perfect match to the published genome sequence: The current Populus genome sequence does not contain the centromeric regions, is a chimeric fusion of the two sequenced haplotypes and contains gaps.
The published genome sequence predicts a ptsO gene starting with a GUG codon and lacking a ribosome binding site (RBS) [22].
The DHN gene family was identified in a genome-wide search of the published genome sequence of V. vinifera, and the corresponding homologues were isolated from V. yeshanensis.
Interestingly, flanking both ends of the missing pAtC58 segment in the published genome sequence is a short 13-bp (TTCNTTCAGGCG) repeat.
