The phrase "a primary alignment of" is correct and usable in written English.
It can be used in contexts where you are discussing the main or most important alignment or arrangement of elements, such as in project management, design, or organizational structures.
Example: "The team focused on establishing a primary alignment of their goals to ensure everyone was on the same page."
Alternatives: "a main alignment of" or "a key alignment of".
It is notable that our method correctly distinguished main domains from swapped domains for almost all of these cases, such that the primary alignment of every DSCO pair was generally based on the main domains.
We thank Gillian Gibb for the primary alignment of avian mitochondrial genomes and software-human interface assistance and Warwick Allan for help with analyses.
Primary alignments of codons were performed with PRANK (Loytynoja and Goldman 2005) and then visually inspected.
A primary sequence alignment of D. melanogaster AANATA with sheep serotonin N-acetyltransferase produced a low sequence alignment score (<12%), and the catalytic core of the mammalian ortholog is not conserved in the fly enzyme.
Interestingly, a primary sequence alignment of all sirtuins revealed that the phenylalanine residue (Phe180) of Sirt3 is conserved in Sirt1 and Sirt2, but not in other sirtuins, which may explain why Sirt4 Sirt7 were not identified in our CLASPI experiments.
Furthermore, a primary structure alignment of FtHPPK-DHPS from various F. tularensis strains reveals a wild type sequence, and no detrimental mutations have been acquired in the attenuated LVS strain we are using.
The structure of TbMCA2 was determined in the presence of samarium, which facilitated the identification of an allosteric Ca2+-binding site comprising four aspartate residues (Asp, Asp, Asp and Asp), which are highly conserved in a primary sequence alignment of both type I and type II metacaspases [ 11].
Rates of urethral stenosis and fistula were highest after primary alignment.
Primary sequence alignment of AANATA with other D. melanogaster AANATL enzymes identified a number of conserved residues that might function in catalysis.
