Sentence examples for a primary alignment from inspiring English sources

If a primary alignment matches the optimal alignment found by SSEARCH, it is a 'match'match

Since the BAM format does support multiple alignments per read, this implementation ignores any read flagged as not being a primary alignment.

Retention time normalization was accomplished in two steps: a primary alignment using the internal standard peptides and a secondary fine tuning using all of the common features.

This allows the user to gain knowledge of repetitive mappings specifically for those sections of the query that comprise a primary alignment.

Optionally, we next perform the FBS step to identify 'Secondary Alignments' that have a high length overlap and score agreement with a primary alignment (Fig. 1D).

The "pm" invocation added the option "--primary", which counted just the primary alignments for reads, including reads that mapped multiple times but ignoring alignments not reported as a primary alignment for a read.

SAMBLASTER will mark as duplicate any secondary alignments associated with a duplicate primary alignment, and thus works particularly well with BWA-MEM output.

Here, we combined the corrected primary alignment (e.g. aligning sequences from each helix only) with the molecular morphometrics data.

A primary sequence alignment of D. melanogaster AANATA with sheep serotonin N-acetyltransferase produced a low sequence alignment score (<12%), and the catalytic core of the mammalian ortholog is not conserved in the fly enzyme.

In our previous study, a primary sequence alignment revealed a 20-aa (60-bp) deletinn in the stalk region of HPAI H5N1 (A/ANAui/1/2005) NA relative to that of 2009H1N1 NA [17].

Furthermore, a primary structure alignment of FtHPPK-DHPS from various F. tularensis strains reveals a wild type sequence, and no detrimental mutations have been acquired in the attenuated LVS strain we are using.