Sentence examples for a preliminary alignment to from inspiring English sources

Additionally, in a preliminary alignment to genome, overlapping reads were aggregated together into contiguous intervals.

Clean-up of sample sets involved preliminary alignment to check for sequence instability or misalignments, as well as confirmation of gene annotation by comparative analyses.

A preliminary alignment of the proteins was used to identify sequence gaps that were removed prior to the determination of sequence divergence.

Seq-Cons [ 7] and LOCAS [ 8] use localized versions of de novo assembly in order to assemble reads in separate blocks determined by the area of the reference that they are first aligned to, rather than trying to determine possible overlaps between all of the reads globally, without a preliminary alignment.

A preliminary alignment was performed with the 61 different complete APNs protein sequences in the database.

A preliminary alignment was constructed using the ClustalW multiple sequence alignment server (http://www.genome.jp/tools/clustalw/) [ 30].

This paper expands on Hapler [ 12], a tool for assembling reliable haplotypes given a preliminary alignment of genetically diverse reads.

A preliminary alignment with several Silene taxa (GenBank accessions in Table 1 and 10 unpublished sequences with similar sequence diversity as the sequences used in the analyses) was used to get the initial primer sequences.

A multiple sequence alignment of the ASRAH domain was generated by editing a preliminary alignment produced by the KALIGN program based on PSI-BLAST HSPs and secondary structure predictions (Fig. 2).

We define this population by the preliminary alignment, taken to represent the phylogenetic diversity in Silene.

The algorithms include a high-performance preliminary alignment, a compartment identification based on a formally defined model of adjacent duplicated regions, and a refined sequence alignment.