Sentence examples for a pdb from inspiring English sources
These six test proteins are: Protein A (PDB code 1FC2), Homeodomain (1ENH), Protein G (2GB1), Cro repressor (2CRO), Protein L7/L12 (1CTF) and Calbindin (4ICB).
The Protein Data Bank (PDB) was scanned for protein structures with incorporated POMs which were assigned a PDB ligand ID resulting in 30 PDB entries.
The PDB uses PDB exchange/macromolecular Crystallographic Information File format (PDBx/mmCIF) (11) to describe the contents of a PDB entry.
Ligplot generates schematic diagrams of protein-ligand interactions from the 3D coordinates in a PDB file.
A user can conveniently select hot region through VMD and write the selection information into a PDB file.
But on the other hand, we still need some structural patterns to deal with the coordinate errors when the resolution of a PDB file is not high.
Scoria stores these residence times in the occupancy fields of each atom and saves the molecular data to a PDB file.
This example demonstrates using a simple bash script as a plug-in for conversion a PDB file into a luscus file.
LeView automatically detects biomacromolecules, ligands and metal ions in a PDB file and shows the user a complete list of these.
Rejection occurs most often when a PDB entry lacks experimental X-ray reflection data, which is the case for the ten structures listed.
The generated membranes can be exported to a PDB-file to be used with external applications [1].
