Sentence examples for a particular tss from inspiring English sources

A particular TSS characterized by (u1,d1) for k-mer K will be recognized, if for u1 we get min(d) ≤d1≤ max(d), and for d1 we obtain min u) ≤u1≤ max u).

For a particular TSS, we referred to a set of expression values across the selected 50 classes of cell types as an expression profile.

Finally, for every remapped TSS, we stored the maximum normalized tag count (tags per million, TPM) from all of the tissues analyzed by Fantom 4. If there was no CAGE tag for a particular Ensembl TSS, we stored -1 as the TPM value.

However, as also demonstrated in earlier studies [ 24, 57, 58], to more accurately detect TSSs and TTSs of transcripts/operons, in particular TSSs, in addition to directional RNA-seq datasets, special datasets targeted to the 5'-endof transcripts are clearly needed, such as dRNA-seq data [ 24] and datasets for the more recently discovered transcription start site RNAs (tssRNAs) [ 97].

A score is assigned to each reference TSS according to spatial density and weights of relevant primary TSS annotations and the reference TSS with the highest score among several alternative TSSs of a particular gene is denoted "best supported".

The average sizes of the regions which covered 80% of the TSSs within a particular TSC were 264 and 122 bp, respectively.

Mapping CAGE reads back to the genome identifies the active TSSs in a particular biological context while counting the number of reads at each site allows for quantification of the downstream RNAs.

The TFBSs are often located in a specific order relative to the transcription start site (TSS) as well as in a particular orientation with respect to the promoter [ 13].

GC-skew peaks satisfying a particular cut-off value were identified as primitive TSS candidates from the noisy GC-skew spectrum using the Savitzky-Golay (S-G) filter [ 19], which simultaneously smoothes and differentiates.

In the case of overlapping promoters, it is difficult to estimate which TSS is affected by the methylation of a particular cytosine.

In this evaluation, we compare the peaks identified by a particular system (or combination of two systems) against the set of RefSeq TSS in the human genome.