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Gene expression was normalized by MAS5 [ 43], a normalization method that appears to have less likelihood of spurious inter-array Pearson correlation as described in [ 44].
For the 36 cancer datasets generated from Affymetrix microarray platforms, the log2 intensities in each gene expression dataset were normalized using the GC-RMA normalization method (15).
Arrays were normalized using Subset quantile Within Array Normalization (SWAN) through minfi, which is a normalization method designed specifically to address the technical and biological variability in the Methylation450K arrays due to the type I and type II probes.
This module implements a normalization method that remove technical between-sample variation by aligning prominent features (landmarks) in the raw data on a per-channel basis.
Here a compact Gamma-tone Filter processor, formulated using the impulse invariant transformation together with a normalization method, is presented.
As in Section 3, we employ a normalization method to obtain an eigenvalue result for generalized pseudomonotone operators.
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This plot shows raw ratios, but ratios normalized by intensity, a common normalization method, show a similar relationship (not shown).
The estimated expression levels were normalized using a quantile normalization method [59].
The expression profiles were normalized using a quantile normalization method implemented in MATLAB R2009b (Mathworks, Natick, MA, USA).
A quantile normalization method was applied to normalize the data [ 19].
PNAE has a higher computational efficiency than NDNE and SDRCLCE because PNAE uses a simpler intensity mapping function and a simpler normalization method.
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