The phrase "a modelled structure" is correct and usable in written English.
It can be used when referring to a structure that has been shaped or designed according to a specific model or representation.
Example: "The architect presented a modelled structure that showcased innovative design elements and sustainable materials."
Alternatives: "a modeled framework" or "a designed structure".
Sequence alignment and structural superimposition of a modelled structure of DUF1572 (UniProt: Q5L211_GEOKA) with YfiT from Bacillus subtilis (PDB ID: 1RXQ [ 35]) as template, reveals the conservation of histidine residues that can potentially coordinate a metal-ion (Fig. 5a).
Figures 4 and 5 show a modelled structure of the GABAA receptor, subtype (α1)2(β2)2γ2, taken from the work of Mokrab et al. (2007).
To begin with, protein structure prediction requires understanding of the differences that exist between a well-folded protein structure and a modelled structure.
These are shown mapped on a modelled structure in Figure 1 (and on a multiple sequence alignment in Additional file 1; tabulated in Additional file 2).
The solvent accessibilities of the amino acid residues in a 3D modelled structure were calculated using a modification of the Shrake and Rupley method, with a water molecule represented by a 1.4 Å radius sphere.
Multiple sequence alignment together with a modelled CtCBP structure, obtained using the crystal structure of Cellvibrio gilvus CBP in complex with glucose as a template, indicated differences in the subsite +1 region that elicit the distinct acceptor specificities of CtCBP and CtCDP.
In this paper, we explore the interaction between Nse3 and Nse4 and we identify a conserved hydrophobic pocket on the modelled structure of yeast Nse3 which mediates the interaction with Nse4.
From a modelled homology structure of human KLK3, a Zn2+ binding site was proposed at His91, His101, and His233, and as a potential fourth ligand an Asp (95, 97, or 98).
Based on the modelled structure in combination with an alignment of other acariform 12S-rRNAs, the greatest sequence conservation was found in the loop region of stem-loops 21 and 27 and the region between stem-loops 48 and 50.
The modelled structure preserves the overall fold of solved cystatin structures: a five-stranded anti-parallel β-sheet wrapped around a five-turn α-helix.
A 10 ns MD simulation was carried out to check the stability of the modelled structure.
