The phrase "a mix of sequence" is not standard in written English and may cause confusion.
It could be used when referring to a combination of different sequences in a specific context, but it lacks clarity.
Example: "The project involved a mix of sequence in the data analysis, leading to varied results."
Alternatives: "a combination of sequences" or "a blend of sequences".
The list of top 10 features clearly indicates that features with higher classification strength are a mix of sequence, structural and physicochemical derived features.
Many of the "Other" kinase families are difficult to classify precisely; some are lineage-specific, and some have a mix of sequence features shared by multiple kinase families — the PfPK7 family, in fact, presents both problems [ 18].
The fact that top-ranked rules are a mix of sequence and structure-based features, indicates that both groups are adding orthogonal predictive power to the model, a feat also observed in the tree models for C2 and PH domains (not shown).
Currently, the public sequence databases include a mix of sequences derived from type and non-type strains and with various degrees of curation and certainty.
However, in the SC dataset, arthropods are represented by a mix of sequences of Drosophila and other slower evolving species when the latter have quasi-complete sequences, decreasing the global relative evolutionary distance of the OTU in the dataset.
The family-specific F-measure captures the classification quality on individual families, but does not reflect performance on a mix of sequences from families with varied conservation and architecture.
This is because a cluster seeded with a chimera (composed of genes A and B, say) will contain a mix of sequences from genes A to B. This chimera-seeded cluster, depending on the value of k, would be able to merge with both clusters containing A sequences, and clusters containing B sequences.
From my experience, I have found that accurate functional prediction requires a mix of local sequence similarity and sequence profile searches, proper sequence analysis with study of sequence and phyletic conservation, structural analysis, network studies of various data points, and correlation with experimental data, all done with a heavy dose of manual tuning.
Transient interference by siRNA was obtained by HIPK2i or Che-1i stealth RNAi sequences (a mix of different sequences) and universal negative control stealth RNAi Negative, Medium GC Duplexes (Life Technologies).
In brief, Activin A/BMP2 chimeras (AB2 library) have been engineered as a mix of six sequence segments originating from two parental molecules, Activin A and BMP2.
In addition, the previous library comprised sequences from the 5' end of transcripts, whereas the present EST database includes a mix of 5' and 3' sequences.
