Sentence examples for a minimal evolution from inspiring English sources

The joint probabilities of codon reconstructions were calculated assuming independence among nucleotide reconstructions at different sites and a minimal evolution model was used to infer codon changes between nodes in the phylogeny.

A minimal evolution tree (WAG + Γ model) was inferred from the protein data set using the programs TREE-PUZZLE 5.0 (to calculate distances), and Fitch (for inferring the topology) from the PHYLIP V3.6a3 program package.

For the construction of the phylogenetic trees of the GH families the sequences of the family members were aligned using Muscle (version 3.8.31) [ 58] after which the alignment was used to generate a bootstrapped minimal evolution tree (1000 bootstraps) using MEGA4 [ 59].

We used the unweighted pair-group method with arithmetic mean (UPGMA) and neighbor-joining algorithms with the Kimura 2-parameter model to generate the distance matrix as well as maximum parsimony and minimal evolution with a heuristic search.

To investigate the evolutionary relationship among MAPKKK proteins, a phylogenetic tree was constructed by employing the minimal evolution (ME) method and the neighbour-joining (NJ) method wrapped in MEGA4 software suite.

However, the P. chrysosporium CYP58 homologues form a cluster separate from other fungal CYP58 proteins on the minimal evolution tree.

However, as evident from the minimal evolution tree, the white rot CYP63 members form a separate cluster on the tree from the CYP52 family members of the ascomycetous fungi and other CYP52-related fungal P450 families.

Compared to the minimal evolution time predicted by BDIMs of different degrees for a single family, the genome-size ensemble of gene families reached the threshold size much faster (by 1.5 2.5 orders of magnitude), and the optimum values of d was lower by ~0.5 (Fig. 35).

Other tree-generating algorithms (minimal evolution, UPMGA and maximum likelihood) resulted in phylogenetic trees with a similar topology regarding the main branches generated by the neighbor-joining method.

These seven P450s form a separate cluster from the known P450foxy proteins of other fungi (ascomycetes) on the minimal evolution tree.

Moreover, an additional phylogenetic tree was constructed by each of the maximum likelihood (ML), neighbor joining (NJ) and minimal evolution (ME) algorithms.