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Thus, the definition of the recurrence plot becomes a matrix of binary values given by: Rleft i,jright)=varTheta left varepsilon -parallel v(i -v j parallel ri -v j parallel; and;1le jle l (3).
A matrix of binary and ternary nitrides containing lighter elements (Al, Ti, V and Cr) with atomic mass <52 and heavier elements (Nb and W) with atomic mass >89 has been formulated.
The genomic relatedness of bacterial strains was estimated from pairwise comparisons of PFGE SmaI-macrorestriction patterns, and a matrix of binary data was constructed based on the presence/absence of each band.
Binary encoding (BE) represents a set of permutations as a matrix of binary characters [ 9].
We generated a matrix of binary discrete characters ("0" and "1" for absence and presence, respectively) [ 68].
A set of genomes is represented by a matrix of binary characters that resembles a gap-free multiple sequence alignment and is often termed a phyletic pattern or a phylogenetic profile.
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MRP encodes source trees as a matrix of partial binary characters: all entries in the matrix are 0, 1, or ?, with each column in the matrix defined by a single edge in a source tree.
It operates by encoding the set of source trees as a matrix of partial binary characters, one character for each branch of each source tree, and then analyzing that matrix using a parsimony heuristic.
However, in this setting, X is a sparse matrix of binary pathways where we expect and are explicitly looking for dominant pathways.
The availability of a matrix consisting of binary accessions for multiple Pfam domains allowed the clustering of R. palustris genomes based on total number of genomes annotated by a Pfam domain.
Let k be the number of samples, m be the number of genes in a module, and let X be a k times m matrix of binary values, with each value indicating presence (x i,j = 1) or absence (x i,j = 0) of an aberration of the j-th gene in the i-th sample.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com