Sentence examples for a matching pathway from inspiring English sources

As shown in Figure 3, when comparing WT and W sh /W sh mice, the majority of the metabolites that varied by genotype had a matching pathway identified based solely on differential gene expression.

Since not all nodes or edges of a pathway belonging to a record have to be present in the original network for which the matching pathway was calculated, only some elements may be highlighted in the Cytoscape network view.

For those down-regulated genes, the TRANSPATH software was not able to predict a matched upstream pathway.

Vert and Kanehisa [ 16] used kernel methods to identify expression patterns that characterize gene sets matching pathways in a given network.

Once we know the activity pattern of the signaling pathways in the network, we can perform an automatic similarity search in the Small Molecule Mechanisms Database (SMMD) for matching pathways based on Connectivity Map data.

A list of identified proteins was entered into Pathway Studio in order to determine matching pathways for each protein.

Only user-selected active pathways from the results table will be queried for matching pathways.

The matching pathways from the SMMD are associated with small molecules, each with information about the small molecule concentration, the cell line with which the experiment was conducted and the microarray platform used.

Another interesting example is pathway 20, which is found to match pathway sce03020 'RNA polymerase' in KEGG, with an ARI score of 0.95.

To match pathway mentions in text, we employed soft dictionary matching as term variations often cause exact string matching to fail [ 24].

Nucleotide sequences of the predicted proteins from scaffolds were retrieved BEDTools-Version-2.13.1 BEDTools-Version-2.13.1 BEDTools-Version-2.13.1h pathway datasets from curated model species.