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Lubricants are frequently applied in pipe-jacking, especially under difficult geological conditions or in cases of a longer alignment.
MassDPW eventually opted to construct Ingersoll's design, giving Route 25 a longer alignment that arced to the north and east of Grazing Fields Farm before turning westward toward the Buzzards Bay business district and the Bourne Bridge.
Where appropriate, a longer alignment was used for the phylogenetic analysis (see supplementary data).
However, it has since been lengthened in a subsequent release and appears to contain a kinase domain with similar features to ACAD10, as shown in Figure 2 (see Supplementary Figure S1 for a longer alignment).
Therefore a longer alignment recovered by BLAST is indeed evidence of greater sequence similarity.
Therefore, they might prefer shorter alignment with small rmsd over a longer alignment with significantly larger rmsd.
Similar(51)
In contrast, a typical MSA simulated with the default INDELible parameters (fig. 5 C) is characterized by shorter indels and a much longer alignment length compared with the true MSA.
We also aligned the same sequences they used and obtained a similar, though longer, alignment as they did without compositional adjustment (Supplementary Fig. S7).
Since these shortened alignments did not improve phylogenetic inference with ML (Table S3) and the longer alignment with 16,352 bp allowed the recognition of all major rodent clades, the latter was used for the following phylogenetic inferences and molecular dating with BEAST.
Locations of breakpoints between non-recombinant parts of the reduced 4045-bp alignment suggested by GARD, and corresponding positions in the longer alignment.
The main advantage of palindrome mode is the longer alignment length, which ensures that the adapters can be reliably detected, even in the presence of read errors or where only a small number of adapter bases are present.
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