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Define L as a length threshold.
As it turned out, this could be accomplished quite simply by setting a length threshold, because poly-A and poly-G sequences were very rarely longer than 50 bases.
A length threshold of 50% was used for the BLASTCLUST clustering.
The first step (identification) uses the GERMLINE algorithm to find shared haplotypes exceeding a length threshold.
The average depth was still larger than 100X even with a length threshold as long as 150 kb.
For fragments up to a length threshold (D), the classification function was linear with an intercept M and slope K.
Similar(37)
Most annotation pipelines will only annotate a putative gene if it has significant similarity to another gene in a database, or if it has an ORF above a certain length threshold.
For example, users can retrieve all sequences which have an authenticated polyT tail with a certain length threshold (e.g., > = 30) by customizing the settings shown in the "Sequences with verified features" web portal.
A minimum length threshold of 60 bp and a penalty for exonic regions less than 100 bp was applied.
With a preset length threshold of pthreshold pixels and a length ratio r > 1 (empirical values given in Table 1), each outer branch shorter than pthreshold is considered: 1.
A lower length threshold would increase the edge number, whereas a higher threshold would decrease it.
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