However a large amount of variance in HRQL remains unexplained.
The un-annotated sequences may still be valid genes, but may have undergone a large amount of sequence divergence or be short fragments of genes.
In addition, when there is a large amount of sequence divergence between two nodes in a tree (site saturation) the accuracy of d S, and to a lesser extent d N, is greatly reduced.
The findings suggest that it may have been difficult to find a large number of miRNAs in this analysis, due to the possibility of a large amount of sequence divergence between S. mansoni and its closest relative in miRBase is S. mediterranea.
We also observed a large amount of within-clade sequence divergence wherein the two most distantly related OTUs from clade A, B, and C share only 57 %, 62, and 63% andno acid similarity, respectively.
There is a large amount of behavioral and morphological divergence between different cichlid species in the East African lakes.
The results are similar under both models and, again, yield a large amount of uncertainty about the number of divergence events that is similar to the prior uncertainty.
After reanalyzing sequence data from 22 pairs of taxa from the Philippines [ 7] under the new model, I find a large amount of posterior uncertainty in the number of divergence events shared among the taxa; a result in contrast with the original msBayes model and congruent with intuition given the richness of the model and the relatively small amount of information in the data.
Again, the new models estimate more divergences, a large amount of posterior uncertainty, and an order of magnitude smaller probability for their respective MAP-divergence model when compared to the M m s B a y e s model (Additional file 1: Figures S26 30).
From the dates of divergence estimates, there was a large amount of rapid speciation in a short amount of time in the late Cretaceous and early Paleogene, but it does not appear that it was a particularly explosive radiation immediately after their evolutionary origin.
