Exact(1)
The simplest such methods compute the optimal folding of a joined sequence formed by the concatenation of the mRNA, a linker and the sRNA.
Similar(59)
Let J = (J 1, …, J | J | ) be a join sequence.
Let a join sequence J = (J 1, J 2, …, J | J | ) be an ordered list of joins.
D efinition 3 Let J = (J 1, …, J | J | ) be a join sequence.
Hence, if R has c AD-components, finding a zero NAD solution becomes the problem of finding a join sequence with c − 1 useful speciations.
Clearly, applying all joins of a sequence J ∈ J yields a single binary tree, and there exists a gene tree H ∈ H (G ) with d NADs if and only if there exists a join sequence J ∈ J with d joins of type NAD.
The proof (not shown) makes abundant use of Ruleset 1. L emma 1 There exists a binary refinement H ∈ H (G ) with d NADs if and only if there exists a join sequence J ∈ J with d joins of type NAD such that, if J i ∈ J is the first join not of type S in J, then all following joins J j, for j > i, are of type AD or NAD.
After Illumina sequencing of the PCR products, a mean of approximately 4 610 000 joined sequence reads were generated per sample.
A map of ordered, joined sequences can result if sufficient BACs are end-sequenced [ 13].
Construct-specific methods are specific for the transgenic constructs, as they target a region that spans artificially joined sequences, such as a coding sequence and the neighbouring control regions.
To build a map that could be used as a reference sequence, we joined sequences from TD bands in the order shown in Table 1, with 200 Ns separating each marker sequence.
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