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Besides, values of mean nucleotide divergences between groups of AMPs show a higher divergence of Cg-defs groups compared to Cg-prp ones.
This observation may indicate a higher divergence of LTRs that were not recognized by the primer combination used in our approach and conservation in coding domains, similar to the pattern of the Angela family within the E. grandis genome.
The lack of detection of several GTFs in the parasite using conventional methods for sequence similarity searches could be ascribed to a higher divergence of these proteins, as well as to the bias introduced in the searches by the overall high A+T nucleotide content.
The apparent absence of canonical HFD TAFs leads to the hypothesis of a higher divergence of proteins of the HFD family in the Plasmodium genome than that of other proteins, beyond the point where they can be identified using homology searches, even the most sensitive of them.
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Moreover, for those who do have access, there is a high divergence of electricity prices between regions.
However when the TIR domain of all the TLRs were compared, goat TLR7 TIR alone showed a high divergence of 19.3 as compared to sheep sequences.
These sequence divergences between orthologous introns of the same Pcl, which are distributed over up to four kingdoms but are also observed between closely related species, can be explained by (i) a high divergence of vertically inherited introns maintained in the compared species during the course of evolution or (ii) independent gains due to lateral transfer.
In contrast to all other studied species, no NDPk7A domain was found (Figure 4B) in M. brevicollis and insects sequences whereas they could be identified in several non-opisthokont eukaryote species, thus suggesting a high divergence of ecdysozoan genes within the metazoan lineage.
This mechanism may potentially explain a directional selection for both, a large number of alleles at the population level and a high divergence of alleles at the individual level.
This could be due to a high divergence of H/ACA RNA structures in H. volcanii or, as discussed above in the case of Ψ-55 formation, to a guide RNA independent pseudouridylation by the Cbf5p/Nop10p dependent machinery acting during transcription on an as yet unfinished tRNA molecule composed of stems and loops.
Moreover, there is an overall higher divergence of the insertions located in the heterochromatin versus NPE (t = 5.91, P = 0.0004), implying a lower turnover rate and retention of older insertions in heterochromatin, allowing genetic drift to increase the occupancy of heterochromatic insertions in populations [2], [24], [25].
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