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Instead, we have proposed the use of an alternative diversity metric - genomic fluidity - which is a reliable and robust estimator of the gene dissimilarity amongst a group of sequenced genomes.
One terminal node may represent a group of sequenced genomes sharing very similar ribosomal sequences.
It would be permissible to take a single ribosome as representative of a group of sequenced genomes (defined by ribosome gene sequence similarity) and include the pan-genome of those organisms in the same way.
Similar(57)
Here, the Baker laboratory's in-house alignment program, K sync, produces a group of sequence homologs, and each of these is modeled by the Rosetta de novo method to produce a decoy (possible structure).
An OTU was defined as a group of sequences with at least 97% pairwise similarity.
A strict requirement for dating an outbreak is to have a set of monophyletic strains (i.e., a group of sequences derived from a common ancestor).
Furthermore, whereas BLASTN simply compares the query sequence with a group of sequences, tree-based methods compare every sequence with all the others and take all the relationships into consideration.
In other words, D is negative when most coalescent events in a group of sequences occur near the recent times, while the time to most recent common ancestor of all sequences is longer than expected.
In addition to the Kareniaceae, the second major identified group in the environmental samples are a group of sequences identical or closely related to Adenoides or Amphidinium cf. semilunatum [81].
Hha is a small transcriptional regulator (8 kDa) that belongs to the Hha-YmoA family which includes a group of sequence-related, small proteins involved in gene regulation for Gram-negative bacteria [12].
The digital transformation of sequential data employed is well suited to this sort of global analysis, whereas character-based search tools and diagnostics do not naturally lend themselves to this task, as it is problematical to generate a "mean" sequence representing a group of sequences using characters.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com