The phrase "a given genome sequence" is correct and usable in written English.
It can be used when referring to a specific genome sequence that is being discussed or analyzed in a particular context.
Example: "In our study, we focused on a given genome sequence to identify potential genetic markers associated with the disease."
Alternatives: "a specific genome sequence" or "a particular genome sequence".
Discovering ncRNA genes on a given genome sequence is a challenging task, quite different from that of discovering protein coding genes.
For assessing the predictive power of smyRNA, we applied the following testing strategy: (1) We trained smyRNA on a given genome sequence and its collection of known ncRNAs and then tested it on another genome sequence.
Ab initio prediction can be an alternative approach to locate promoter regions in a given genome sequence.
From a given genome sequence, a naïve six frame translation is performed and, if desired, a decoy database generated.
Note: An asterisk * signifies that a given genome sequence was used in the global phylogenetic analysis (see Methods).
Recent advances in Next Generation Sequencing makes affordable overlaying transcriptomic and epigenomic information onto a given genome sequence in a diverse panel of cell types, and conditions.
Our approach to finding these young intact LTR retroelements is equivalent to finding pairs of highly similar short subsequences (LTRs, between 100 and 1000 bps long) located within a range of distance (between 1000 to 20000) from the given genome sequence.
For each 20 bp TIS upstream sequence in a given genome, a corresponding sequence with exactly the same dinucleotide frequency are generated using uShuffle [ 47].
To rule out the possibility that any sequences of interest came from contaminating bacterial or plant DNA, rather than the species for which a given genome had been sequenced, the DNA sequence of all fungal and oomycete LRR-containing genes was compared to the genome sequences of 1,337 species of bacteria and three species of higher plant using BLASTN [23].
There are several different ways to derive the nucleosome positioning pattern from a given genome (chromosome, isochore) sequence - positional auto- and cross-correlation [ 21, 20], signal regeneration [ 5], and N-gram extension [ 4].
The execution comprises, as shown in Figure 1, two main stages: 1) the generation of tag candidates that are good primers and 2) selection for tag candidates that are not present in a given genome (or any other sequence formatted for use with the local BLAST).
