Exact(10)
In each block a given accession was represented in a 5 plant/plot scheme (half-siblings).
Sub-sampling was preferred to bootstrap because of the genetic structure of the panels and the simplicity in file preparation from not having several copies of a given accession.
Pairwise distances between all sequences from a given accession were calculated using the maximum composite likelihood nucleotide substitution model implemented in MEGA version 4 [ 73].
Briefly, all sequences for a given accession were first pooled and observed by eye, and chimeric sequences easily identified and removed.
Affymetrix ATH1 GeneChip probeset IDs were entered as query and the average expression value for each gene in a given accession with the standard error was returned.
Accordingly, bolting rates before winter were determined in the 2009/10 environments as the fraction of bolting individuals among all plants of a given accession ranging from 0 to 1, where 0 means none of the plants bolted and 1 means all plants of a given accession bolted.
Similar(50)
Raw data were deposited in the National Center for Biotechnology Information Gene Expression Omnibus in accordance with "minimum information about microarray experiments" guidelines (all data is MIAME compliant) and given accession numbers GSE20721.
This novel microsatellite repeat was given accession number GF100472 (database of sequence tagged sites at NCBI: http://www.ncbi.nlm.nih.gov/dbSTS/).nih.gov/dbSTS/
As the RefSeq set is specifically designed for protein-coding genes, all other transcript types are not given accession numbers.
All the queries used were representative sequences that were given accession numbers or were selected from reference papers.
These cDNA sequences have been submitted to the NCBI database and given accession number GU997664-GU997678 for CYP450s and GU997656-GU997663 for UGTs.
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