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We also investigated the extent of linkage disequilibrium (LD) as a function of genomic distance within the genome to infer the expected maximal distance between the causal variation and the markers displaying association with the phenotype.
In the context of GWA studies, this plot shows the negative logarithm of the P-value as a function of genomic location.
Since genomic GC content influences codon usage, we examined codon usage patterns and predicted protein amino acid content as a function of genomic GC content within eight different phyla or classes of bacteria.
The solutions of the fitted ODE as a function of genomic position were then compared with the observed RNA-seq curves.
(D ) The mean interprobe distances for the indicated yeast strains for probe sets A, B, C, and D are plotted as a function of genomic distance.
(B ) The persistence length Lp of chromatin in the Type I and Type II model as a function of genomic distance.
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GeSTer further defines a genomic ΔGcutoff which is a function of the genomic G+C content of the bacterial species.
In the genome plot, M is plotted as a function of the genomic location of the probe sequence.
Fitness landscapes, a pictorial representation of fitness values as a function of viral genomic sequences or environmental factors, is rugged for viruses, as supported by the effect of individual mutations and environmental modifications on virus replicative performance.
There is evidence that some of the hybrid dysgenesis may be a function of incompatible genomic imprinting [ 11, 12].
In order to investigate the propensity for the formation of tDNA clusters, we consider the cumulative distribution of consecutive tDNA pairs as a function of their genomic distance.
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