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One sample in the 100-ppb As exposure group showed far more RNA degradation according to the AffyRNADeg program (a function available from BioConductor as part of the Affymetrix library; http://www.affymetrix.com).
The image plots shown in Figure 2 can be generated using a function available in hsphase and are a useful visual diagnostic tool to evaluate the accuracy of strand detection and/or phasing.
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There is a compact function available in the c3net package with the same name, c3net, that takes the data set as input and outputs the inferred network.
To facilitate comparison of M. marinum and M. ulcerans reference genomes using Nesoni, short read data for M. marinum "M" was simulated via in silico shredding of the reference genome to generate a set of 100 bp short reads (read depth x15 insert length 280 bp) using a utility function available within Nesoni.
There is also a search function available.
An ordination method, the GE-biplot [ 55], based on the singular value decomposition of the data matrix of scaled log2 signal values, was obtained using an R function available at the website [ 54].
Palm adds useful details, like an ever-present battery indicator, a Google search function available from the opening screen and a clever VCR-like interface for listening to voice mail.
A simplified missile simulating a commercial aircraft engine was designed from an impact load time function available in literature.
The algorithm used for calculating gradients along a cortical surface is a general use Caret function available with Caret 5.65 and has been used to find surface gradients in other data types (Glasser and Van Essen 2011).
And it makes entering location data incredibly easy, as it has a search and autocomplete function available.
This function, available as a result of the use of the Apache Lucene [13], allows a user to perform free text searches within the semantic queries.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com