Sentence examples for a full alignment from inspiring English sources

For each database search, sequences that score more than the family-specific threshold are aligned to the HMM profile automatically to make a full alignment.

A full alignment of user distributions in both idle and connected modes also avoids the ping-pong effect between these two states.

This score is based on the number of words in the short-term history, which are correctly aligned with the transcript: only three values are used, corresponding, respectively, to a full alignment of the current trigram, a full alignment of the current bi-gram, and an alignment of one word only.

A full alignment optimization combining an enhanced variant of the ANOLEA/SSE predictor (for scoring) and a genetic algorithm (for sampling) is currently under investigation.

Existing relationships can be detected in a fraction of runtime without using a full alignment procedure.

A full alignment of the kinase domains is shown in Additional file 1.

Each curated family in Pfam is represented by a seed and full alignment.

We next created pair-wise alignments of each sequence to HXB2, made a full DNA alignment by sequentially combining the pair-wise alignments, codon aligned the multiple sequence alignment using HXB2 coding information (using the strategy we developed for the GeneCutter tool at the Los Alamos database [www.hiv.lanl.gov]).hiv.lanl.gov]

In each case, the reads involved were realigned with the CB4856 genome using cross_match (P. Green, unpublished data), providing an alternative alignment method and a full Smith Waterman alignment of the read against the genome, and analyzed.

Each Pfam-A family consists of a curated 'seed alignment' containing a small set of representative members of the family, profile hidden Markov models (profile HMMs) built from the seed alignment, and an automatically generated full alignment, which contains all detectable protein sequences belonging to the family, as defined by profile HMM searches of primary sequence databases.

More generally, if there are k residues in T about which shifts/rotations are defined, the full alignment A is partitioned into k + 1 partial alignments: A (T 1, …, T i 1 ), A (T i 1, …, T i 2 ), …, A (T i k, …, T | T | ), where i 1 < i 2 < … < i k < | T |.