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It means that a short dsDNA behaves like a rod rather than a flexible string.
The restraint is applied within a flexible string, or between a bead of a flexible string and a rigid-body, with a threshold distance equal to four times the sum of the radii of the two connected beads.
Within a rigid-body, all the beads and Gaussians have their relative positions constrained during configurational sampling, while in a flexible string the beads and the Gaussians are restrained by the sequence connectivity (below).
Segments without a crystallographic structure or comparative model (i.e., segments predicted to be disordered or structured without a known homolog) were represented by a flexible string of large beads corresponding to a maximum of 30 residues each.
Representation of Subunits The domains of the 40S⋅eIF1⋅eIF3 subunits were represented by beads, arranged into either a rigid body or a flexible string, based on the available crystallographic structures and comparative models.
To improve the accuracy and precision of the model ensemble obtained by satisfaction of spatial restraints, beads and Gaussians of a given domain were arranged into either a rigid-body or a flexible string, based on the available crystallographic structures and comparative models.
Similar(54)
Our structural analysis reveals that the luminal domain is formed by a flexible string-of-pearls arrangement of nine repetitive cadherin-like Ig-like domains, indicating an evolutionary connection between NPCs and the cell adhesion machinery.
The Philharmonic responded with dazzling and often ferocious brass and woodwind playing, full-throttle percussion and a plangent, flexible string sound that could evoke a howling wind one moment and dark-hued smoldering the next.
Similarities between the problem of a perfectly flexible string and filament with non-negligible bending stiffness are exploited in identifying the possible modes of oscillation.
Heavyweight fishing line can be used for hanging the tubes, as in the photos, but a more flexible string will give better results.
In this paper, robust adaptive boundary control is developed for a class of flexible string systems under unknown spatiotemporally varying distributed disturbance and time-varying boundary disturbance.
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