Sentence examples for a first alignment from inspiring English sources

However the time necessary for the two DNA molecules to reach a first alignment is not the only relevant parameter for efficient repair.

A first alignment was performed using the Muscle program [ 39].

A first alignment step with rCRS [ 19] was made using BioEdit v.7.0.9.0, to determine a preliminary haplogroup.

SIEVE operates in two steps, a first alignment of the chromatogram employing a ChromalignTM algorithm and, secondly, a recursive base-peak framing.

After a first alignment, sequences not containing an aspartate at the expected nucleophile position were removed, and the alignments were repeated.

A first alignment optimization was produced using the default simulated annealing algorithm while specifying parameters "-r 0.995 -k 10" to override Viterbi refinement and the resulting alignment was submitted to guided Baum-Welch expectation maximization (parameters "-B -i").

A second alignment was performed to remove poorly aligned regions in the dataset using Gblocks 0.91b [ 103] under a relaxed approach.

For handling inverted transitions we use a second alignment table, X G ′ for aligning T with G′, which is initialized in a similar fashion to X G (naturally S m values are obtained for the complementary nucleotide).

A second alignment that maximized the number of sequences by allowing some sequences to be missing was also constructed.

This alignment was then fitted to a second alignment based on a needle alignment of E. coli Slt70 and the RvhB1 protein from Brucella suis [116].

For a second alignment, comprising bat orthologues, the MAPP score of each amino acid variant was derived, together with the score of all other variants at the same site in the alignment that differed from the ancestral sequence by an equal or fewer number of nucleotide substitutions.