Sentence examples for a file containing the list from inspiring English sources

Paths for an environment definition file and a file containing the list of environment feature annotated alignments are given to Ulla as input: $ ulla -c feature.def -l alignments.lst Ulla produces three different types of substitution tables: raw counts tables, substitution probability tables and log-odds ratio tables.

To run the software, at least three files (marked in yellow in Figure  3A) should be provided: (i) a category file defining categories and their GO terms, (ii) an annotation file containing gene-to-GO annotations, and (iii) a gene file containing the list of genes to be analyzed.

The output of the program is a CIF file containing the list of atoms that should be included in the representation of the compound.

The main output for SLiMFinder is a delimited text file containing the list of motifs that meet the user-specified threshold for corrected significance (Sig).

In addition to the PeakML file, targeted profiling requires an additional tab-delimited input text file containing the list of compounds of interest (see Supplementary Fig. S2).

IPA analysis was performed analyzing a file containing the global gene list, obtained from filtering procedures (17883 probe set), that includes statistical validated genes (470 probe sets, 386 genes).

This file contains the list of viromes in the GOV dataset.

The additional file contains the list of mathematical symbols, the risk analysis to determine the number of buffer credits, and the species specific parameters and volume equations.

This file contains the list of the functional R genes proteins used as reference in the phylogenetic trees.

Search terms can be entered either individually or in a comma-separated list or by uploading files (e.g. Excel spreadsheets, fasta files, or simple text files) containing the list of terms.

I suggest to add files containing the lists of calpains together with annotations (taxonomy, complete/fragment, etc).