Exact(4)
The Model SEED can generate a draft model for a desired organism based on RAST annotation of genes [ 23].
Starting from a model for a related organism or a collection of pathways, and genomic data, they produce a draft model for the target organism.
Second, we developed a draft model for the use of telehealth to support the management of chronic conditions which encapsulated the main findings from the evidence review.
Given a set of ortholog maps between two genomes, and a well-annotated metabolic model for one of them, it automatically produces a draft model for the target, providing a well-documented starting point for manual curation.
Similar(55)
As a result, a draft model was developed and used as a start point for subsequent network refinements.
During model reconstruction, various sugar transport reactions and metabolic pathways were manually checked and added to the draft model for a better understanding of the carbohydrate metabolism in S. stipitis.
The web-based methods, FAME [ 17] and MicrobesFlux [ 18], are able to produce draft models for ~750 and ~1,200 KEGG genomes, respectively.
Draft models for the five organisms were developed using the workflow shown in Figure 4, which uses a combination of reviewed gene annotations and identified homologs between the new organism and Cyanothece 51142.
Our reaction data set can, in principle, be used to generate draft models for all 4,650 bacteria in the IMG database, KEGG organisms, or other user-defined organisms annotated by KO.
The functions in MicrobesFlux can help users build a drafted metabolic model for further reconstruction and flux analysis.
Davis was a 27-year-old fine arts major, still mourning the death of an older brother in an auto accident a month earlier, when the professors Daniel Livingston and Craig Wedderspoon presented a unique assignment to him: draft a model for a statue of one of college football's iconic active coaches.
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