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23Another possibility is to use different alignment algorithms under default values, as did Morrison and Ellis 24 and Kemler et al. 25 The latter approach appears to have several advantages; for instance, one would expect the differences between distinct alignment programs to be higher than those between different parameterisations of the same algorithm.
For the three GA2-derived transcriptomes, a similar number of total, as well as distinct alignments with the Arabidopsis proteome were present with a substantial amount of overlap between the three GA2-transcriptomes (Table 3, Figure 1A).
Surprisingly, the growth of caffeine on mica via HWE reveals a distinct crystal alignment as obtained from solution cast films.
We aim to find a set of distinct alignments which maximizes the sum of scores of each alignment in the set.
TBLASTN uses a greedy algorithm to link nearby distinct alignments and computes an E-value for these linked sets[ 14].
Alignments were made between viral proteomes and viral transcriptomes to determine their degree of overlap (Table 3 and additional file 1, Table S8); alignments include any known, unannotated, or novel viral genes with a distinct match between one transcript and one protein.
Despite the structural homology, the topology of the CylM dehydration domain is quite different from those of canonical kinases, resulting in a distinct connectivity between conserved secondary structural features, which can only be gleaned through a structure-based alignment.
But there is a distinct correlation between privilege and pressure.
Yet, there's a distinct difference between dreamers and visionaries.
There is a distinct interface between top-coal and roof.
There's a distinct difference between mere survival and succeeding in real world business.
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