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However, the statistical model had low statistical power for a QTN that was in a different linkage phase from Labrador retrievers which comprised ∼50% of the individuals.
In several cases, this probably reflected either the fact that the identified marker was not the culprit polymorphism, but had a different linkage disequilibrium pattern with the culprit polymorphism across different studies.
Unsurprisingly, rs4894796 was found within a different linkage disequilibrium (LD) block than the SNP associated with central corneal thickness and POAG (rs4894535).
The flour beetle CG18657 orthologue (TC007236) is on a different linkage group to the TipE locus and the silk moth gene (BGIBMGA013920) is on a different scaffold.
Indeed, the first association was reported in a Finnish sample, which is a genetic isolate and expected to have a different linkage disequilibrium (LD) landscape.
For two genes to be derived by genome duplication, each should be a member of a different linkage group and duplication product.
Similar(48)
Indeed, in a previous study, different linkage signals were found for parent and teacher ratings of a quantitative assessment of autistic behaviors in ASD families (Duvall et al. 2007).
Furthermore, the testing of a population showing different linkage disequilibrium (LD) structures may assist in identifying the true causative variant in the genomic region of interest.
In both cases an immediate neighbor is an Arabidopsis gene, yet a gene found on different linkage groups.
Consensus species maps for Q. robur and Q. petraea were established by combining parental map datasets for each species with the "join-combine groups for map integration" command of JoinMap, which creates a composite map from different linkage groups sharing common markers.
Additional file 7: Figure S3 shows that the PIC values varied differently along the different linkage groups.
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