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Thus, the proposed telomerase catalytic subunits are phylogenetically conserved and represent a deep branch in the evolution of reverse transcriptases.
Phylogenetic studies place Xanthomonads as a deep branch in the γ-Proteobacteria class, close to that of the β-Proteobacteria [66], [82].
A recent molecular phylogeny of the ascomycetes places this class of fungi as a deep branch around the Pezizomycetes, Orbiliomycetes, and some early lichenized ascomycetes, and this placement received moderate to strong support from different sets of genes [25].
In the phylogeny of lipoyltransferase (Figure S8), the Trimastix homolog grouped weakly with Dictyostelium (0.58 PP/36% BP) as a deep branch of a moderately supported clade (1.00 PP/79% BP) that consisted mostly of eukaryotes, but included one branch of archaeal and bacterial lipoyltransferases.
This LIII subgroup forms a deep branch in a split network.
This strain was located on a deep branch in separate clade shared only with the E.coli O157 H7 Sakai strain.
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Finding a deep branching archaeon that uses a bacterial system would truly validate this hypothesis.
Why isn't a deep branching of this and other verrucomicrobial ftsZ relative to homologs in other phyla an equally plausible explanation for its divergent sequence?
Conversely, another analysis done around the same time supported a deep branching archaeon as the host of mitochondria [ 50], which would be inconsistent with the eocyte hypothesis.
Therefore, although we have depicted N. equitans as a deep branching lineage within Euryarchaeota (Fig. 4), based upon our analysis, its placement within Euryarchaeota is not resolved.
In this tree, T. denitrificans formed a deep branching lineage showing no specific relationship to either the Helicobacter/Wolinella clade or to the Campylobacter species (Fig. 5B).
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