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A dataset was assembled representing seven plastid and nuclear DNA regions in 239 taxa in Xanthorrhoeaceae, including 197 species in the genera Aloe, Aloidendron, Aloiampelos, Aristaloe, Gonialoe and Kumara.
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In order to improve our phylogenetic hypothesis applying a multi-locus approach, a second dataset was assembled with a selection of 106 terminals, including 91 Stenodactylus (see Additional file 1: Table S1) for which two extra nuclear genes were sequenced.
A reference dataset was assembled from nuc LSU sequences published in GenBank.
A large dataset was assembled from Keio Collection gene knockout phenotypes grown on 34 different substrates.
For each gold standard a sample expression dataset was assembled containing only the subset of genes in the gold standard set resulting in four sample expression datasets, one for each gold standard.
A high quality bioactivity dataset was assembled by keeping only assay-independent bioactivity information, namely: the constant of inhibition, K i, and the constant of dissociation, K d.
To test the viability of the established protocols, a full multi-locus Dinornis dataset was assembled and examined thoroughly for signs of allelic dropout, such as a deficit of heterozygous individuals in comparison to the expected Hardy-Weinberg proportions.
The drug dataset was assembled by merging molecules obtained from the DrugBank [22] and a subset of Kyoto Encyclopedia of Genes and Genomes database (KEGG DRUG) [23].
An extensive dataset was assembled containing wood density measurements from historical studies carried out over a period spanning more than 50 years.
The aminergic GPCRs dataset was assembled by gathering bioactivity information of 91 different receptors (9 species) from ChEMBL 15, [39] producing a total number of datapoints of 24,593.
The dataset was assembled by random sampling from the Maybridge catalogue (2198 selected registers) and from our own library (441 selected registers).
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