The TFsNet was obtained from a TFs-only dataset that excludes all non-TF genes and constitutes an overview of Arabidopsis roots TFs inferred interactions.
Indeed, the proportion of significant distances increases again to 34.6% in the FPLS dataset, i.e., in the dataset that excludes food-producing population samples of less than 20 individuals.
Consequently we repeated the GSEA analysis on a dataset that excluded the hypopharynx cases and showed that it did not affect the results noteworthy (data not shown).
Therefore we repeated these calculations with a dataset that excluded the B. 'Austria' lineage and found that phylogenetic autocorrelation could be successfully removed (Table 3).
To eliminate the possibility of LBA artifacts [ 44], we conducted phylogenetic analyses based on a dataset that excluded the sequence data of the long branches using the same analysis procedures.
However, when Mongolian or Turkic populations were excluded, the coefficients between genetics and linguistics of 3-way tests for respective partial datasets reduced to an insignificant level (p = 0.102 and 0.176, respectively), while it is not the case for other partial datasets that excludes populations of a language like Tai-Kadai and Tibeto-Burman.
Given that SNP rs4959039 tags a large haplotype block that includes HLA-A, mapping the class I susceptibility gene, or genes, will not only require classical typing of HLA-A but also could require an even larger dataset that excludes HLA-DRB1*15:01 carriers.
Separate phylogenetic analyses were constructed from four 400-bp regions of the envelop alignments (positions 1 399; 400 799; 800–1199; and 1200 1493), and on a fifth dataset that excluded the region beyond the breakpoint.
The new dataset that excludes 4 fake M 7 earthquakes is called Dataset 2, while the original dataset that includes all 24 M ≥ 7.0 earthquakes is called Dataset 1.
To refine our analysis we created a subset-of-bZARP (sbZARP) dataset that excluded groups A and D members but included all remaining 172 proteins with a bZIP domain of 60 amino acids (53, 60 and 59 bZIPs from Arabidopsis, rice and black cottonwood, respectively).
