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A database of profiles of all the clusters was generated.
The iterative profile comparison program psi-square can be applied to any query vector on a database of profiles.
The comparison of the gene expression profile with a database of profiles of known hepatotoxins indicated that hepatic toxicity of the new chemical is mediated by the aryl hydrocarbon nuclear receptor.
It has the drawback to detect only homologs classified in PFAM families or whose structure is solved (since HHpred can use a database of profiles derived from the PDB), but the recent tool HHblits, based on the same principles, can detect in principle any homolog, and is very powerful too.
Similar(56)
Using the computed HMM, the program iteratively searches a database of profile HMMs, with similar HMMs used to update the query HMM.
These profile HMMs were compared with HHsearch [ 25] to a database of profile HMMs corresponding to multiple sequence alignments obtained from the COG, KOG, and PFAM databases, also with predicted secondary structures (see Methods for details).
The identification of SCOP domains in RBC and parasite proteins involved a search against a database of profile hidden Markov models 34 (HMMs) representing domains in proteins of known structure, at an E-value threshold of 0.0001.
Additionally, all Pfam profiles were also queried against a database of Pfam profiles to obtain a Pfam-Pfam mapping (search parameters: Z-score ≥ 9, 80%% query and hit length coverage).
For the database to be searchable with cross platform response profiles and gene lists it has to be rewritten as a database of expression profiles over non-redundant gene lists.
BehaviorMatrix ran the files against a database of online profiles and pulled a sample of more than 4,000 matches, weighted to represent the district's electorate, Mr. Davis said.
Create a database of customer profiles so that with every interaction you have with them you can lower your customers' sacrifice — what they have to settle for to buy from you versus what they truly want and need.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com