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The function basis also permits redefining the physical states of basis species (if a corresponding species in that state is present in the thermodynamic database) and/or setting the activities (a) or fugacities (f) of the basis species to be used in the following calculations.
We use the mean NFMP wood density for a tree that was present in a NFMP with at least 80% of its trees identified to the genus or species level and was missing a corresponding species or genus level wood density.
a Corresponding species is involved in the relevant expansion events.
The latter could be used by PhyloPythiaS to infer a corresponding species model, but were less helpful for the similarity-based classifiers.
The associated computational problem can be formulated as follows: Given a gene tree T and a corresponding species tree Tsp, reconcile all differences between the two trees by postulating an appropriate DLT scenario.
The gene duplication problem is to find for a given set of gene trees a corresponding species tree with the minimum reconciliation cost (Fellows et al., 1998a; Hallett and Lagergren, 2000; Ma et al., 2000; Stege, 1999).
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The possible actions are do nothing (wild type); delete a gene (remove the corresponding species); knock down a gene (increase the messenger RNA degradation rate by ten folds); decrease gene ribosomal activity (decrease the parameter value by 10 folds).
Wild-type aggregates are excluded from the column as a thinner peak and the corresponding species migrate higher on a native gel than m8-GFP aggregates.
Based on the user's selection the algorithm hence solves contradictions between the SBO term of a modifier and the corresponding species.
In the network graph there exists an edge between an intermediate node and a species node if and only if the corresponding reaction involves, as reactant or product, a complex of the corresponding species.
Each point represents the mean across three receptors and error bars represent S.E.M. DOI: http://dx.doi.org/10.7554/eLife.08163.010 To determine whether spiking and oscillating receptors could encode the very short IPIs in group signals, we compared the magnitude of receptor responses with the IPIs recorded from a group of the corresponding species.
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