Sentence examples for a composite alignment from inspiring English sources
MMM takes each alignment and constructs a composite alignment, which is then used by Modeller [17] to construct the 3D model of lamprey ER.
Analysis of tri-phosphorylated peptides shows that they also contain a varying number of intervening residues (anywhere from 0 to 8 amino acids) in between the three phosphorylated Ser/Thr residues, as shown in a composite alignment of the tri-phosphorylated peptides (Figure 8F).
A composite alignment of all 16 centromeres centered over the midpoint of the functional centromere (mid-Cen) revealed that the inner peak maxima were 33-bp apart and the outer peak maxima were 53-bp apart.
Concatenating these mutually exclusive selections of sites produces a composite alignment that preserves a maximal amount of information for reconstructing the placement of the rare SerRS and ThrRS types (see Additional file 3).
Amino acid sequence alignments were concatenated to form a single composite alignment.
The composite alignment of di-phosphorylated peptides (Figure 8E) shows that the +3 and the +1 positions relative to the first phospho-site are the most preferred second-phosphorylation sites.
Composite alignments of the selected reads from the 23 plants with the unigene set were evaluated based on different parameters in SAMtools (see methods for details).
The RMP values of FISH-mapped loci on all cucumber chromosomes based on this study and our previous works [ 27, 28] were summarized in Additional file 1. Figure 2 showed composite alignments of three maps.
The resultant tree is a composite of separate alignments of the B-genome and A- plus D-genome ω-gliadin sequences since the repeat structure of 1B ω-gliadins is too diverged for realistic alignments with 1A and 1D ω-gliadin sequences.
This is as expected for a composite material with no alignment of fibers.
In brief, SHERA takes overlapping short reads as input, finds the best alignment, produces a composite read, calculates new quality scores for the overlapping bases, and scores the alignment confidence.
