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An example of a multiple genome comparison tool is GenColors from Jena Prokaryotic Genome Viewer (JPGV) [ 81].
The comparison tool is part of a wider government programme that aims to give consumers better access to, and control over, their personal data.
The comparison tool was run using a collection of eligibility criteria from two documents: the clinical trial protocols NCT00545129 and NCT01011751.
The work reported in this paper, with the exception of the eligibility criteria comparison tool, was conducted while AR was a Research Associate at The University of Manchester.
RAST's sequence-based comparison tool was used to compare NE strain JGS4140 to all other C. perfringens strains.
TOMTOM motif comparison tool was employed to compare these three elements with the known motifs.
ACT (Artemis Comparison Tool) was used to enable the visualization of BLAST comparisons between the genomes [ 53].
Artemis and the Artemis Comparison Tool were used to visualize the comparative genome architecture and localization of SNPs [ 119, 120].
TOMTOM motif comparison tool was used to compare the elements identified in this study to known motifs [ 59].
The 3-D superimposition of protein structures obtained by using structure comparison tools is very useful in quantifying structural dissimilarity and in analyzing structural divergence.
In such cases, less stringent comparison tools are used and a cutoff of 1 e − 10 (16) or even higher (17) is employed.
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