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Furthermore these classes may match the abstraction levels of a high-level Petri net used to model the MS. Each level can be simulated on a processor or a cluster of processors which can communicate between themselves using a network.
Nimrod/G is designed to assist scientists in performing studies, using concurrent execution on a cluster of processors or the resources of a computational grid.
The rapid-interaction testing stage can also easily be parallelized, further reducing computation if a cluster of processors is available for analysis.
Phylogenetic trees were estimated within the Bayesian statistical framework using a parallelized version of the program MrBayes v3.1 [ 94] on a cluster of processors running the linux operating system (2000000 generations with trees sampled every 50 generations).
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On a cluster of 128 processors, the new work-stealing strategy demonstrates a speedup between 12% and 32% over X10's existing scheduler.
With a cluster of 10 processors, and a potential maximum speed-up of 10x, the parallel algorithm of MOLA performed with a speed-up of 8,64× using AutoDock4 and 8,60× using Vina.
In this work we propose a high performance parallelization of the software package COMPSYN, devoted to the production of syntethic seismograms, on a cluster of multicore processors with multiple GPUs.
We present a theoretical analysis of the advantage of nagging with respect to partitioning, and give empirical results obtained on a cluster of 64 processors that demonstrate nagging's effectiveness and scalability as applied to A∗ search, αβ minimax game tree search, and the Davis Putnam algorithm.
Generation of the entire 50,000 models for a single run takes approximately 24 hours on a cluster of 120 processors.
Including the pairwise energy precomputation, the entire redesign took almost a day on a cluster of 10 processors.
Including the pairwise energy precomputation, the B RDEE redesign required 2 weeks on a cluster of 16 processors, as compared to ∼3 h for traditional DEE for a single rigid backbone.
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