By contrast, the CDS with the lowest score of 0.02 was only 60 amino acids in length, 35% low complexity, had a highly deviant base composition, it was also more costly than average and was found in a poorly characterized region of the genome.
To illustrate the range of CDS involved, the top scoring CDS was 547 amino acids in length, zero percent low complexity, average G+C content, but was more costly than average and came from a poorly characterized region of the genome.
The LMPC design provides an explicitly characterized region from where stability can be probabilistically obtained.
The kinase and FAT domains are joined by a relatively long, poorly characterized, region of ~233 residues containing two proline-rich motifs (PR2, PR3), which provide the basis for many SH3-mediated protein-protein interactions of FAK [ 3].
A secretary signal sequence locates at the N-terminus followed by a ligand-binding A region and a characterized R region composed of SD repeats.
Utilizing dominance as a proxy for characterizing regions that impact inbreeding depression has been utilized previously [ 12, 13], but is computationally demanding and requires large samples sizes.
A QTL cluster for skin anthocyanins was detected at the bottom of LG 9, in the region where a major locus for skin colouration was mapped earlier using a sequence characterized amplified region (SCAR) marker [ 24, 25].
Thirdly, we wanted to focus in this initial study on a fully characterized genomic region of special immunological importance rather than to follow a whole genome expression profiling approach.
A sequence characterized amplified region (SCAR) marker CgY1 designed from CgMSM amplified an 829 bp fragment in the male C. grandis but not in the female plants.
The present study used control-matched animals to compare effects on a well characterized brain region following gamma irradiation.
First, a sequence characterized amplified region (SCAR) marker for the FRO1 gene from P. sativum (GenBank accession AF405422) was used in common bean [ 52, 55].
